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Full link to the documentation - a graph theory visualization library created at the University of Toronto
Cytoscape.js is an open-source graph theory (a.k.a. network) library written in JS. You can use Cytoscape.js for graph analysis and visualisation.
Cytoscape.js allows you to easily display and manipulate rich, interactive graphs. Because Cytoscape.js allows the user to interact with the graph and the library allows the client to hook into user events, Cytoscape.js is easily integrated into your app, especially since Cytoscape.js supports both desktop browsers, like Chrome, and mobile browsers, like on the iPad. Cytoscape.js includes all the gestures you would expect out-of-the-box, including pinch-to-zoom, box selection, panning, et cetera.
Cytoscape.js also has graph analysis in mind: The library contains many useful functions in graph theory. You can use Cytoscape.js headlessly on Node.js to do graph analysis in the terminal or on a web server.
Cytoscape.js is an open-source project, and anyone is free to contribute. For more information, refer to the GitHub README.
The library was created at the Donnelly Centre at the University of Toronto. It is the successor of Cytoscape Web.
Who uses Cytoscape.js
Big-name tech
- Amazon
- Apache Software Foundation
- Duo
- Elastic
- Fujitsu
- GitHub
- Hewlett Packard Enterprise
- IBM
- Linux Foundation
- Meta
- Microsoft
- MongoDB
- Puppet
- RedHat
- Tencent
- Uber
Government
Research resources
- APID
- AraQTL
- Arches
- BioCyc
- BioGRID
- BioPlex
- cBioPortal
- ConsensusPathDB
- dSysMap
- Elsevier
- Ensembl
- FlyBase
- Galaxy
- GeneMANIA
- GraphSpace
- Intermine
- MetagenomeScope
- NDEx
- Newt
- OpenBio
- Pathway Commons
- PINet
- Plotly (Dash)
- QuantStack (Jupyter)
- STOCKS
- SynBioHub
- The Gene Ontology Consortium
- WormBase
Research & non-profits
- Aalto University
- Albert Ludwig University of Freiburg
- Barcelona Supercomputing Center
- BBC
- Ben-Gurion University of the Negev
- Berkeley Lab
- Broad Institute
- Carnegie Mellon
- Earlham Institute
- École Polytechnique Fédérale de Lausanne (EPFL)
- Erasmus Medical Center
- European Molecular Biology Laboratory (EMBL)
- FAIRplus
- Georgia Institute of Technology
- Getty
- Harvard University
- HOPR
- Howard Hughes Medical Institute
- Idaho National Laboratory
- Indiana University
- INRAe
- Institut Curie
- Institute for Systems Biology
- International Rice Research Institute
- Johns Hopkins University
- Lerner Research Institute, Cleveland Clinic
- Maastricht University
- Max Plank Institute
- Nanyang Technological University
- Network of European Bioimage Analysts
- NHS
- Norwich Research Park
- Observational Health Data Sciences and Informatics (OHDSI)
- Open Ownership
- Oregon Health and Science University
- Paris Sciences et Lettres University
- Penn State University
- Research Institute for Fragrance Materials
- Sanger Institute
- Spanish National Bioinformatics Institute
- SRI International
- Stanford University
- The Foundation for Research and Technology – Hellas
- The Molecular Science Software Institute
- Tsinghua University
- UNIST
- Università degli Studi di Milano - Bicocca
- University of Alabama
- University of Barcelona
- University of California, Berkeley
- University of California, San Diego
- University of California, San Francisco
- University of Cambridge
- University of Electronic Science and Technology of China
- University of Heidelberg
- University of Helsinki
- University of Jyväskylä
- University of Leipzig
- University of Maryland
- University of Toronto
- University of Utah
- Vanderbilt University
- Virginia Tech
- Wageningen University and Research
- World Monuments Fund